| File | Description | Format | Column header description |
|---|---|---|---|
| reference.gtf | v1.0, novel lncRNAs and known transcript and exon information that may be related to ESCC were identified through ESCC patient transcriptome datasets released by 12 projects. | tab separated | Column 1: seqname - Name of the chromosome
Column 2: source - Name of the program that generated this feature, or the data source (database or project name) Column 3: feature - Feature type name, e.g. transcript, exon Column 4: start - Start position of the feature Column 5: end - End position of the feature Column 6: score - A floating point value Column 7: strand - Defined as + (forward) or - (reverse) Column 8: frame - One of '0', '1' or '2'. '0' indicates that the first base of the feature is the first base of a codon, '1' that the second base is the first base of a codon, and so on Column 9: attribute - A semicolon-separated list of tag-value pairs, providing additional information about each feature |
| aseInfo.txt | v1.0, information on alternative splicing events that may be associated with ESCC identified through ESCC patient transcriptome datasets released by 12 projects. | tab separated | Column 1: EID - Alternative splicing event ID
Column 2: Event type - Type of the alternative splicing event, e.g. SE, A3SS, A5SS, MXE, RI Column 3: Chromosome - Name of the chromosome Column 4: Start - Start position of the alternative splicing event Column 5: End - End position of the alternative splicing event Column 6: Strand - Defined as + (forward) or - (reverse) Column 7: Included isoform - Isoform including exon under the comparison of the two transcripts, specifically the shorter total length of the transcript intron as the included isoform Column 8: Excluded isoform - Isoform excluding exon under the comparison of the two transcripts, specifically the longer total length of the transcript intron as the excluded isoform Column 9: Overlapped protein domain - Protein domains that intersect with the alternative splicing event at genomic locations Column 10: relatedTID - Transcript related to the alternative splicing event |